Mt3.5-based Downloads

Detailed description of the data files is available from the readme file. All files listed below are based on Mt3.5 reference genome and Mt3.5v4 annotation. The latter is provided for your convenience. Please note that Mt3.5v4 is not the latest version of the annotation. The latest versions of the reference genome and annotation can be downloaded from JCVI's FTP site. Please contact us if you would like to obtain M. truncatula hapmap data that is not listed below.

Annotation
Mt3.5v4_chr1-8_TEs.gff.gz 1 MB 2012-06-06
Mt3.5v4_chr1-8_genes.gff.gz 6 MB 2012-06-06
Mt3.5v4_chrT_genes.gff.gz 328 KB 2012-06-06
Mt3.5v4_chrT_posmap.txt.gz 75 KB 2012-06-06
Mt3.5v4_chrU_TEs.gff.gz 102 KB 2012-06-06
Mt3.5v4_chrU_genes.gff.gz 377 KB 2012-06-06
Mt3.5v4_chrU_posmap.txt.gz 2 KB 2012-06-06
checksum_md5.txt 471    2012-06-06
Gene Context
Mt3.5_var288_chr1_context_20120606.txt.gz 14 MB 2012-06-06
Mt3.5_var288_chr2_context_20120606.txt.gz 18 MB 2012-06-06
Mt3.5_var288_chr3_context_20120606.txt.gz 23 MB 2012-06-06
Mt3.5_var288_chr4_context_20120606.txt.gz 21 MB 2012-06-06
Mt3.5_var288_chr5.1_context_20120921.txt.gz 15 MB 2012-09-21
Mt3.5_var288_chr5.2_context_20120921.txt.gz 15 MB 2012-09-21
Mt3.5_var288_chr5_context_20120921.txt.gz 30 MB 2012-09-21
Mt3.5_var288_chr6_context_20120606.txt.gz 11 MB 2012-06-06
Mt3.5_var288_chr7_context_20120921.txt.gz 21 MB 2012-09-21
Mt3.5_var288_chr8_context_20120606.txt.gz 15 MB 2012-06-06
Mt3.5_var288_chrC_context_20120606.txt.gz 10 KB 2012-06-06
Mt3.5_var288_chrT_context_20120606.txt.gz 799 KB 2012-06-06
Mt3.5_var288_chrU_context_20120606.txt.gz 8 MB 2012-06-06
checksum_md5.txt 1 KB 2012-09-21
Outgroup
Mt3.5_outgroup_chr1_snp_20130227.txt.gz 29 MB 2013-02-27
Mt3.5_outgroup_chr2_snp_20130227.txt.gz 37 MB 2013-02-27
Mt3.5_outgroup_chr3_snp_20130227.txt.gz 44 MB 2013-02-27
Mt3.5_outgroup_chr4_snp_20130227.txt.gz 41 MB 2013-02-27
Mt3.5_outgroup_chr5_snp_20130227.txt.gz 57 MB 2013-02-27
Mt3.5_outgroup_chr6_snp_20130227.txt.gz 16 MB 2013-02-27
Mt3.5_outgroup_chr7_snp_20130227.txt.gz 41 MB 2013-02-27
Mt3.5_outgroup_chr8_snp_20130227.txt.gz 30 MB 2013-02-27
Mt3.5_outgroup_chrC_snp_20130227.txt.gz 62 KB 2013-02-27
checksum_md5.txt 729    2013-03-01
SNPs
Mt3.5_var288_chr1_snp_20120606.txt.gz 108 MB 2012-06-06
Mt3.5_var288_chr2_snp_20120921.txt.gz 142 MB 2012-09-21
Mt3.5_var288_chr3_snp_20120606.txt.gz 182 MB 2012-06-06
Mt3.5_var288_chr4_snp_20120921.txt.gz 161 MB 2012-09-21
Mt3.5_var288_chr5.1_snp_20120921.txt.gz 118 MB 2012-09-21
Mt3.5_var288_chr5.2_snp_20120921.txt.gz 121 MB 2012-09-21
Mt3.5_var288_chr5_snp_20120921.txt.gz 238 MB 2012-09-21
Mt3.5_var288_chr6_snp_20120606.txt.gz 88 MB 2012-06-06
Mt3.5_var288_chr7_snp_20120921.txt.gz 165 MB 2012-09-21
Mt3.5_var288_chr8_snp_20120921.txt.gz 121 MB 2012-09-21
Mt3.5_var288_chrC_snp_20120606.txt.gz 70 KB 2012-06-06
Mt3.5_var288_chrT_snp_20120921.txt.gz 7 MB 2012-09-21
Mt3.5_var288_chrU_snp_20120606.txt.gz 61 MB 2012-06-06
checksum_md5.txt 1 KB 2012-09-21
TASSEL
Mt3.5_var288_chr1_tassel_20120606.txt.gz 143 MB 2012-06-06
Mt3.5_var288_chr2_tassel_20120606.txt.gz 185 MB 2012-06-06
Mt3.5_var288_chr3_tassel_20120606.txt.gz 231 MB 2012-06-06
Mt3.5_var288_chr4_tassel_20120606.txt.gz 209 MB 2012-06-06
Mt3.5_var288_chr5.1_tassel_20120606.txt.gz 152 MB 2012-06-06
Mt3.5_var288_chr5.2_tassel_20120606.txt.gz 151 MB 2012-06-06
Mt3.5_var288_chr5_tassel_20120606.txt.gz 303 MB 2012-06-06
Mt3.5_var288_chr6_tassel_20120606.txt.gz 105 MB 2012-06-06
Mt3.5_var288_chr7_tassel_20120606.txt.gz 213 MB 2012-06-06
Mt3.5_var288_chr8_tassel_20120606.txt.gz 154 MB 2012-06-06
Mt3.5_var288_chrC_tassel_20120606.txt.gz 74 KB 2012-06-06
Mt3.5_var288_chrT_tassel_20120606.txt.gz 8 MB 2012-06-06
Mt3.5_var288_chrU_tassel_20120921.txt.gz 75 MB 2012-09-21
checksum_md5.txt 1 KB 2012-09-21

Site hosted by: Nevin Young's Lab at University of Minnesota. Managed By: Joseph Guhlin

Primary Collaborators: INRA - Montpellier | ENSAT - Toulouse | Noble Foundation | University of Southern California

Co-Principal Investigators: University of Minnesota N. Young, P. Tiffin, M. Sadowsky, B. Stupar, K. Silverstein | NCGR J. Mudge, A. Farmer

Boyce Thompson Institute M. Harrison | Hamline University B. Martinez-Vaz