Detailed description of the data files is available from the readme file. All files listed below are based on Mt3.5 reference genome and Mt3.5v4 annotation. The latter is provided for your convenience. Please note that Mt3.5v4 is not the latest version of the annotation. The latest versions of the reference genome and annotation can be downloaded from JCVI's FTP site. Please contact us if you would like to obtain M. truncatula hapmap data that is not listed below.