Tools Overview

  • GBrowse A17 SNPs and related information for 288 Medicago truncatula accessions. SNP calls are based on the M. truncatula v4.0 reference genome. Gene context information is based on the reference genome annotation Mt4.0v1.
  • BLAST A17 Interface to NCBI BLAST v2.2.27+ for searching against Mt4.0 or Mt3.5v5 assemblies, CDS sequences or peptides.
  • BLAST R108 Interface to NCBI BLAST v2.2.27+ for searching against the R108 assembly.
  • BLAST CADL Interface to NCBI BLAST v2.2.27+ for searching against the CADL assembly.
  • BLAST de novo assemblies The Medicago HapMap project has sequenced and assembled several accessions de novo and released them to the community in accordance with the Toronto agreement. This tool allows you to BLAST against these accessions and download a small area and flanking regions.

Site hosted by: Nevin Young's Lab at University of Minnesota. Managed By: Joseph Guhlin

Primary Collaborators: INRA - Montpellier | ENSAT - Toulouse | Noble Foundation

Co-Principal Investigators: University of Minnesota N. Young, P. Tiffin, M. Sadowsky, B. Stupar, K. Silverstein | NCGR J. Mudge, A. Farmer

Boyce Thompson Institute M. Harrison | Hamline University B. Martinez-Vaz